BtaEX6046814 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017982 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr11:101185637-101200648:-
Coord C1 exon
chr11:101200577-101200648
Coord A exon
chr11:101191053-101191532
Coord C2 exon
chr11:101185637-101185796
Length
480 bp
Sequences
Splice sites
3' ss Seq
GCGCCCGGGCTGGCCCGCAGCGG
3' ss Score
4.83
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGGTCAACGACCGGTGGAAGACCATGGGCGGCGCTTCCCAACTTGAGGACCGGCCGCGCGACAAGCCGCAG
Seq A exon
CGGCCGAGCTGCAGCTACGTGCTGTGTACCGTGCTGCTGTCCCTCGCCGTGCTGCTGGCTGTGGCGGTCACCGGTGCCGTGCTGCTCCTGAACCACGCCCGCGTGCCCGGCACGGCGCCCCCGCCCGTCGTCAGCACCGGGCCGGCCGGGGCCAACAGCGCGCTGGTCACCGTGGACAGGGCCGACAGCTCGCGCCTCAGCATCCTCATTGACCCGCGGTGCCCTGACCTCGCCGACGGCTTCGCCCGCCTGGAGGGCGCCCAGGCCTCCGTGCTGCAGGCACTGAGCCAGCGCCAGGCCGAGCTGCGGCTGCCGGGTGAGCAGGAGCAGGAGCTGCTGGACACGCTGGCGGACCAGCTCCCTCGGCTGCTCGCCCGGGCCTCGGAGCTACAGGCCGAGTGTTCTGGGCTGCGGAAGGGGCACGGCGCCCTGGGCCAGGGGCTCAGCGCCCTGCAGAGCGAGCAGGGCCGCCTCATCCAG
Seq C2 exon
CTTCTCTCTGAGAGCCAAGGCCACATGGCTCACCTGGTGAACTCGGTCAGCGATGTCCTGGACGCCCTGCAGAGGGACCGGGGGCTGGCCCGACCCCACGTCAAGGCTGACCTTCAGAGGGCACCTGCCAGGGGATCACGGCCCCGCGGCTGCGCCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017982-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.144 C2=0.407
Domain overlap (PFAM):
C1:
NO
A:
PF104734=CENP-F_leu_zip=PU(72.8=46.9)
C2:
PF104734=CENP-F_leu_zip=PD(25.2=48.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAACGACCGGTGGAAGAC
R:
CGTGATCCCCTGGCAGGT
Band lengths:
209-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]