GgaEX6015205 @ galGal4
Exon Skipping
Gene
ENSGALG00000003866 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr17:6049387-6054936:-
Coord C1 exon
chr17:6054789-6054936
Coord A exon
chr17:6050314-6050790
Coord C2 exon
chr17:6049387-6049546
Length
477 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTCTGTGTCCCCAGAGG
3' ss Score
11.95
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CGCGGAGTGCGGGGCGCGGGGCGCGGGGAGCGCCGGGGCGGGGGCTCGGGGACTTCGGGCCGAACTTGGCGGCGCGATGGGGAACGAGCGCTGGAAAACCATGGGAGGAGCCTCGCAACTTGAGGACGGGCAGCAGGAGAAACCGCAG
Seq A exon
AGGATGAGCTGTGGCTACGTGCTGTGCACCGTCCTGCTCTCGGTGGCCGTCCTCTTGGCGGTGACAGTGACAGGGGCCATCCTCTTCATGAACCACTACCACACGCCCGTCACCGAGCCGCCCCCCGTCATCAGCACCAACCCCGAGGAGGCCAACGCGTTGGTGACCATCGAGAAAGCCGACAGCTCCCGCATCAACATCTTCATCGACCCCAACTGCCCCGACCCAGCGGGCAACGTCGGGCGCCTGGAGGGGCTGCAGGGCTCCCTGCTGCGCGCCCTCGCCGAGCACGACGCTGAGGCCAAGGCCACCAAGGGCCAGCAGAAAGCTCTGCTGCTTGGTGTGGCCGACGAGGTGGCCAAGCTGGTGACGCACGCCGCGCAACTGCGAGCTGACTGCGATGGCCTCAAGAAGGGGCACAGCGCTATGGGGCAGGAGCTCAGCGCCCTGCAGAGCGAGCAGGGCAGGCTCATCCAG
Seq C2 exon
CTCCTCTCAGAGAGCCAAACCAACATGGCCCGGCTGGTGAGCTCGGTCAGCGATGTGCTGGACACACTGCAGAAGGAGCGCGGCGGCGTCCGGCCCCGGCTCAAAGCTGACCTGCAGCGAGCCCCGGCACGGGGAGCACGGCCCCGTGGCTGCTCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003866-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.176 C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCGGGCCGAACTTGG
R:
CTGCAGGTCAGCTTTGAGCC
Band lengths:
215-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]