GgaEX6015205 @ galGal3
Exon Skipping
Gene
ENSGALG00000003866 | FIBCD1
Description
NA
Coordinates
chr17:6665238-6670737:-
Coord C1 exon
chr17:6670640-6670737
Coord A exon
chr17:6666165-6666641
Coord C2 exon
chr17:6665238-6665397
Length
477 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTCTGTGTCCCCAGAGG
3' ss Score
11.95
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACTTCGGGCCGAACTTGGCGGCGCGATGGGGAACGAGCGCTGGAAAACCATGGGAGGAGCCTCGCAACTTGAGGACGGGCAGCAGGAGAAACCGCAG
Seq A exon
AGGATGAGCTGTGGCTACGTGCTGTGCACCGTCCTGCTCTCGGTGGCCGTCCTCTTGGCGGTGACAGTGACAGGGGCCATCCTCTTCATGAACCACTACCACACGCCCGTCACCGAGCCGCCCCCCGTCATCAGCACCAACCCCGAGGAGGCCAACGCGTTGGTGACCATCGAGAAAGCCGACAGCTCCCGCATCAACATCTTCATCGACCCCAACTGCCCCGACCCAGCGGGCAACGTCGGGCGCCTGGAGGGGCTGCAGGGCTCCCTGCTGCGCGCCCTCGCCGAGCACGACGCTGAGGCCAAGGCCACCAAGGGCCAGCAGAAAGCTCTGCTGCTTGGTGTGGCCGACGAGGTGGCCAAGCTGGTGACGCACGCCGCGCAACTGCGAGCTGACTGCGATGGCCTCAAGAAGGGGCACAGCGCTATGGGGCAGGAGCTCAGCGCCCTGCAGAGCGAGCAGGGCAGGCTCATCCAG
Seq C2 exon
CTCCTCTCAGAGAGCCAAACCAACATGGCCCGGCTGGTGAGCTCGGTCAGCGATGTGCTGGACACACTGCAGAAGGAGCGCGGCGGCGTCCGGCCCCGGCTCAAAGCTGACCTGCAGCGAGCCCCGGCACGGGGAGCACGGCCCCGTGGCTGCTCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003866-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.176 C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
PF029949=Transposase_22=PU(60.7=40.9),PF104734=CENP-F_leu_zip=PU(61.6=38.4)
C2:
PF029949=Transposase_22=PD(37.4=74.1),PF104734=CENP-F_leu_zip=PD(36.4=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCGGGCCGAACTTGG
R:
CTGCAGGTCAGCTTTGAGCC
Band lengths:
215-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]