MmuEX0019240 @ mm10
Exon Skipping
Gene
ENSMUSG00000026841 | Fibcd1
Description
fibrinogen C domain containing 1 [Source:MGI Symbol;Acc:MGI:2138953]
Coordinates
chr2:31821472-31846005:-
Coord C1 exon
chr2:31845711-31846005
Coord A exon
chr2:31838298-31838771
Coord C2 exon
chr2:31821472-31821568
Length
474 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGGGCTGACCTACAGCGA
3' ss Score
5.55
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCGGGACGCGGGGACGGCGCGGCGCGGGCGGCTCTCGGAGGCTCGCGCCCGCGCTCCCAGCAATCACACGCGCTCACACGCAGCCTAGCTGGCGGCCGCCGCTCCCGGGCCACCCCGGATCCCCGGCACCGAGGGGACCTCCTGCGAGTGCAACGCACCCTGTGCACCCCTCGCCTCCTTTGCACTCGCCCTTGCCCCGCAACCCCGCTGGTCTTGCTGGAAGATGGTCCACGAGCGGTGGAAGACCGTGGGCAGCGCGTCCCAACTTGAGGACCGACCGCGCGACAAACCGCAG
Seq A exon
CGAGCAAGCTGCAGTTATGTCCTGTGCACGGTGCTCCTGTCCCTTGCGGTGCTGCTGGCGGTGGCTGTCACCGGTGTGGTTCTCTTCCTGAACCACACCCACACACCAGGCACGGCGCCCCCACCCATCGTCAGCACGGGGACTGCCGGAGCCAACAGTGCCCTGGTCACTGTGGAGAGGGCTGACAGCTCCCACCTCAGCCTTCTCATCGACCCTCGCTGCCCCGACCTCACTGACAGCTTCGCCCGCCTGGAAGGCATCCAGGCCTCCATCCTTCGGGCACTGAGTGAGCACCAGGCACAGCCGAGGCTGGACGGTGCCCCCGAGCTGCTGGACGCACTGGCTGACCAGCTGCCCCGGCTGCTAACCCGGGCCTCTGAGCTGCAGGCTGAATGTGCTGGGCTGCGCAAGGGACACAGCCTGCTGGGCCAGGGCCTCAGCACCCTGCAGAGTGAACAGGGTCGCCTCATCCAG
Seq C2 exon
GTATTTCAGCGCCGGGAAGATGGCTCTGTGAACTTTTTCCGAGGTTGGGAGGCGTACCGGGAGGGCTTCGGCAAGCTCACAGGAGAGCACTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026841_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0014713=Fibrinogen_C=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAGCAATCACACGCG
R:
GCCAGTGCTCTCCTGTGAG
Band lengths:
336-810
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types