DreEX0032815 @ danRer10
Exon Skipping
Gene
ENSDARG00000060393 | fibcd1
Description
fibrinogen C domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-070424-245]
Coordinates
chr5:33532246-33585344:-
Coord C1 exon
chr5:33584891-33585344
Coord A exon
chr5:33542440-33542919
Coord C2 exon
chr5:33532246-33532405
Length
480 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTCTCTGTCTGCAGAGG
3' ss Score
11.23
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTTGAATGTAGCTGGTGTGGAATACATGAAGACTTTATAACGCCGCGGAAGGAAAGAAAAACGGCTCAGAGAACAACTTTACGGAAGACTAAGGAGTTTATTTATTACTGTTTCCTTATCAAGTACGTATGATATTACCATGTGTGTGGGGCGAGAGTCTTCGCCGCCCCTTTTAGACCAGAATTAGTCAGTGTGGTCCCGGAGTAGAGGCTAAATCAGTGTCTTCTCGATCTCGCGCACGCTCCTCACCATTCTTTTCCTTACCCCAGCGGTTATTTATTTCCATGGAATAACTGAATCGGGAAACGACTGAACGACAAGGAGTTTTTTTTCCCACCGCCTGTAACTGACAGGCGGTTTAGGGTTGGCTCTTCTCCGGAGAATGCTCAATGATCGATGGGGAATCATGAACAGCTCACCGGAACTCGAAGACGGACAGCGGGGCAAAAACCAG
Seq A exon
AGGATGAGTTGTAGCTATCTGCTATGTACCATCTTGCTCTTCGTGGCCGTTCTGCTCGCAGTCACAGTGACAGGAACCATTCTTCTTATGAACCACTACCAGGCTCCCCCTATGTCGGACGGCCCGCCCCATATTAGCACCAATCAGGACGAAGCCAATGCACTGGTGACAGTCGAGAGGGGTGATGGATCACGCATCAATATCTTCATCGACCCCAACTGTCCTGATTATAACAGTAACTTCCTGCGGCTGGAAGGTGTGCAGACGTCTTTGCTGCACTCGCTCACTGACCACGATACGGATCTCAAGTCTGTCAAAGGTCAGGATCGAGCGCTATTGGTCAACTTGGCAGAGGAAGTTGCTAAGCTGTCTGCTCATGCGGGGCAGCTGAAGATGGACTATGAATCTCTCAGAAGAGGACAAAGCAACCTGGGACAGGACCTGAATACACTGCAGACTGAACAAAGCAGACTTATACAG
Seq C2 exon
CTGTTATCCGAGAGCCAGATTAACATGGTGAAGGTTGTCAACTCTGTGAGTGATGCTCTGAACGCCATGCAGAAAGAAACAGGAGGCTTGAAGGCCAGGGTGAAGGCTGACCTGCAGAGGGCGCCAGTCAGAGGAGTGCGCCTTAAAGGATGTGCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060393-'0-3,'0-2,2-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.188 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTCCTTACCCCAGCGGTT
R:
CCTTTAAGGCGCACTCCTCTG
Band lengths:
350-830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]