BtaEX6046873 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021896 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr11:101357338-101361745:+
Coord C1 exon
chr11:101357338-101357404
Coord A exon
chr11:101359619-101359745
Coord C2 exon
chr11:101361584-101361745
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTACTTGTTCTTTTTTCCAGAAT
3' ss Score
9.84
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGATTTAGTGCTGGCAGCATCCGCGGCTTCCACAGAAGTCAGCATCCTCGCGCGACAGAGCAGCCAG
Seq A exon
AATAGTTGGGAATCTTGGCTGTTGGAGGACTCTAGTCGAGCTGAACTGCCTGTGACAGACAAGAGTGATGATTCCTTGCCCATGGGAGTTGCCATAGATTACACTAACCAAGTGGAAATCACCATCA
Seq C2 exon
CTGAGGAGAAGACTCTTCCACCTGCTCCAGTGCTTATGTTACTTTCGACAGATGGTGTGCTTTGTCCTTTTTACATGATCAATCAAAATCCTGGCGTAAGGTCCCTCCTCAGGACACCGGAGCGGCTCTCGTTGGAAGGAGAGCGGCAACCCAAGTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021896-'7-10,'7-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.256 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGCGGCTTCCACAG
R:
GATGACTTGGGTTGCCGCTC
Band lengths:
210-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]