DreEX0052195 @ danRer10
Exon Skipping
Gene
ENSDARG00000016212 | nup214
Description
nucleoporin 214 [Source:ZFIN;Acc:ZDB-GENE-110203-3]
Coordinates
chr5:71146213-71147097:+
Coord C1 exon
chr5:71146213-71146279
Coord A exon
chr5:71146658-71146784
Coord C2 exon
chr5:71146939-71147097
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCAGATCCACCAATGTGCAGGTG
3' ss Score
3.54
5' ss Seq
TGTGTAGGA
5' ss Score
-2.9
Exon sequences
Seq C1 exon
GGATCTGGTTTTGGCTGCTTCAGCTGCTGCTATTGAGGTCAGCATCATCGCCAAACAAGAGGACAAG
Seq A exon
GTGAACTGGGAGCTGTGGCTGCTGGAAGACGCCAGTCGAGCGGAGCTTCCTGTCACGGAGAACAGCGAGGACACTCTTCCTGTGGGCGTGGCCATCGATTACACCAGCCAGGAGGACATTCAACTGT
Seq C2 exon
CTGATGAGAAGAAGGTTCCTGCTGCACCGACGCTGCTGCTGCTCTCCACTGATGGAGTTCTGTGTCCGTTCTCTTTACTCAACCTGAACCCGGGAGTCAAACAGCTGAACGCCACTGCGGTACCACTGCCGCTGGACGGGGAACGAGCACCCGCCGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016212-'11-17,'11-16,12-17
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.186 C2=0.352
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTGGTTTTGGCTGCTTC
R:
GGTGCTCGTTCCCCGTCC
Band lengths:
218-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]