RnoEX6016409 @ rn6
Exon Skipping
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11000242-11002278:+
Coord C1 exon
chr3:11000242-11000308
Coord A exon
chr3:11001334-11001460
Coord C2 exon
chr3:11002117-11002278
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTGTCATGTCTCCCCCCAGACT
3' ss Score
10.94
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGATTTAGTGCTGGCAGCATCTGCAGCGTCAACAGAAGTTAGCATCCTTGCTCGACAAAGTGATCAG
Seq A exon
ACTAATTGGGAATCTTGGGTACTGGAAGACTCTAGTCGAGCTGAACTGCCTGTGACAGACAAGAGCGATGACTCCTTGCCCGTGGGTGTTGCCATAGATTACACCAATGAAGTAGAAGTTGCCATCA
Seq C2 exon
ATGAAGAAAAGACTCTTCCTCCTGCTCCGGTTCTCCTGTTACTTTCAACAGATGGTGTACTTTGTCCATTTTATATGATCAATCAAAATCCCGGGGTTAGGTCCCTAATCAAGACCTTAGAGCTGATCTCAGCAGAGGGAGAGCGCCAGCCTAAGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393-'1-4,'1-2,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.256 C2=0.327
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTGCAGCGTCAACAGAA
R:
GAGGACTTAGGCTGGCGCTC
Band lengths:
211-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]