MmuEX0032768 @ mm10
Exon Skipping
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:31989073-31991425:+
Coord C1 exon
chr2:31989073-31989139
Coord A exon
chr2:31990235-31990361
Coord C2 exon
chr2:31991264-31991425
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTGTCATGTCTCCCCCCTAGACT
3' ss Score
10.36
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGATTTAGTGCTGGCAGCATCTGCAGCTTCTACAGAAGTTAGCATCCTTGCTCGACAAAATGATCAG
Seq A exon
ACTAATTGGGAATCTTGGCTGCTGGAGGACTCTAGTCGAGCTGAACTGCCTGTGACAGACAAGAGTGATGACTCCTTGCCCATGGGTGTTGCCATAGATTATACCAATGAAGTGGAAGTCACCATCA
Seq C2 exon
ATGAAGAAAAGACTCTTCCGCCTGCTCCGGTTCTCCTGTTACTTTCAACAGATGGTGTGCTTTGTCCATTTTATATGATCAACCAAAATCCTGGGGTTAGGTCCCTAATCAAGACCTTGGAACTGATCTCAACAGAAGGAGAGCGACAGCCTAAGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.264 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCTGCAGCTTCTACAGA
R:
GACTTAGGCTGTCGCTCTCCT
Band lengths:
210-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types