BtaEX6046890 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101633494-101634532:+
Coord C1 exon
chr11:101633494-101633580
Coord A exon
chr11:101634087-101634191
Coord C2 exon
chr11:101634340-101634532
Length
105 bp
Sequences
Splice sites
3' ss Seq
CACCGTGTTCTTCCCTCCAGGCC
3' ss Score
12.09
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GACTCTGATTTCAGCTTGCAGCCTGGCTCTGCCTCTGGTCCTGCGGGGAATCCAGTTGTCAAGCTTCAGGACGCATTGGCCAGTAAC
Seq A exon
GCCGGGCTGGCCCCCAGCATCCCCATCCTGCGGCGGGACCACCACATCCAGAGGGCCATCGGCCTCTCCCACATGTCCTTCCCTACCGCCGACCTCACTCTGAAG
Seq C2 exon
ATGGAGTCTGCGCGCAAGGCTTGGGAAAACTCGCCCAGCTTGCCGGAGCAGAGCTCGCCAGGAGGCGCCGGCTCAGGCCTGCAGCCCCCATCCTCCGGGGGAACCTCCAGCGGGGTCAGCTATAGCTCCTTTGGCGGCGTCTCCATGCCCCCCGTGCCAGTGGCCTCGGTCGCACCTTCTGCATCCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400-'31-42,'31-41,32-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.931 A=0.286 C2=0.754
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGCCTCTGGTCCTG
R:
TGGAAGGGATGCAGAAGGTG
Band lengths:
255-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]