DreEX0007116 @ danRer10
Exon Skipping
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71243523-71247396:-
Coord C1 exon
chr5:71247115-71247396
Coord A exon
chr5:71244402-71244503
Coord C2 exon
chr5:71243523-71243700
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTGTGTGTGTGCAGGCG
3' ss Score
8.72
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GATTCAGATGCGGGACCGGAGCAGAGTAAAGAGCACAAGCCTGGTCCGATCGGGAATGAGCGCTCGCTGAAGAACCGGAAAGGCTCAGAGGGTCTGGAGCGCCTGGAGGGATCCATCACTCCCGTTAACGGCGTGGATATTCACGTGGAAAACGTCATTCCTGTGCCGCCCATCGAGTTCGGCGTCAATGCGAAAGATTCAGACTTCAGCCTTCCTGCAGGATCTGCAGCCGTGCCCGTCTCCAACCCCGTCTCCAAACTGCAGGACGCCCTCGCCGGGAAC
Seq A exon
GCGGGCCTGACTCAAGCCATCCCGATGCTGCGCAGAGATCACCTGCAGCCCGCCATTACCCTGAACCCCATCAGCTTCCCCTCCGCTGACCTCACGCTCAAG
Seq C2 exon
ATGGAGTCCGCCAGGAAGGCGTGGGAGAACTCTCAGGCTGTGCCGGAGCAGGGGTCTCCAGGCTCCGGCTCTTCAGCTCAGCCGGTCTGCAGTGTGGGCTCCTCCAGCGTCAGCTACAGCTCCTTCTCCATGCCACCCATGCCTGTGGCGTCTGTGGCCCCGTCCGTCTCCATGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639-'29-34,'29-33,30-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.830 A=0.265 C2=0.483
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGCTCAGAGGGTCTGGA
R:
CACAGCCTGAGAGTTCTCCCA
Band lengths:
247-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]