GgaEX1046442 @ galGal3
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6834808-6836695:+
Coord C1 exon
chr17:6834808-6834894
Coord A exon
chr17:6835824-6835928
Coord C2 exon
chr17:6836503-6836695
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATTCACCAATCTCCCCTCAGGCA
3' ss Score
8.9
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GACTCTGACTTCAGCTTGCCACCTGGTTCTGCTTCTGGCACAGCAGCTAATCCTGTCACCAAATTGCAGGATGCCTTGGCCAGTAAT
Seq A exon
GCAGGGTTAACGCAGTCCATTCCCATTCTGCGAAGAGATCACCACCTTCAGAGGTGCATTGGCCTGAACCCAATGTCCTTCCCCACTGCAGAGCTTACTCTTAAG
Seq C2 exon
ATGGAGTCTGCTCGTAAGGCTTGGGAAAACTCTCCTAGTTTACCAGAACAGAACTCTCCAGGAGGTGCAGGCTCAGGCATCCAGCCTCCTTCCAGTGTTGGAGCTTCCAACGGTGTCAGCTACAGCTCTTTTGGCGGAGTTTCTATGCCTCCTATGCCTGTGGCGTCCGTAGCACCTTCTGCATCTATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776-'28-35,'28-32,29-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.966 A=0.429 C2=0.662
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGACTTCAGCTTGCCACC
R:
CCACAGGCATAGGAGGCATAG
Band lengths:
248-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]