HsaEX1029670 @ hg38
Exon Skipping
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131483359-131485140:+
Coord C1 exon
chr9:131483359-131483445
Coord A exon
chr9:131484686-131484790
Coord C2 exon
chr9:131484948-131485140
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCCTCCTCTCCAGGCA
3' ss Score
11.09
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GACTCCGATTTCAGCTTGCCACCTGGTTCTGCCTCTGGTCCTACTGGGAGTCCAGTTGTTAAACTTCAGGATGCCTTGGCCAGTAAT
Seq A exon
GCAGGGTTAACACAGAGTATCCCCATCCTGCGGCGGGACCATCACATCCAGAGGGCCATCGGTCTCTCCCCAATGTCCTTCCCCACCGCCGACCTTACTCTGAAG
Seq C2 exon
ATGGAGTCTGCGCGCAAGGCTTGGGAAAACTCCCCCAGTTTGCCGGAGCAGAGCTCTCCAGGCGGCGCTGGCTCAGGCATCCAGCCTCCATCCTCTGTGGGTGCCTCCAGCGGGGTCAACTACAGCTCCTTCGGTGGAGTGTCCATGCCACCCATGCCTGTGGCCTCTGTAGCACCTTCTGCTTCTATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723-'55-70,'55-68,57-70
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=0.473 C2=0.598
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCTGCCTCTGGTCCTACT
R:
CAGAAGGTGCTACAGAGGCCA
Band lengths:
244-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains