BtaEX6046972 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018710 | TTF1
Description
Bos taurus transcription termination factor, RNA polymerase I (TTF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102083]
Coordinates
chr11:102496890-102502676:-
Coord C1 exon
chr11:102502598-102502676
Coord A exon
chr11:102498897-102499027
Coord C2 exon
chr11:102496890-102497124
Length
131 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTCTCTTCCTCTTAGGTA
3' ss Score
12.07
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
Exon sequences
Seq C1 exon
GTAAGGGCATTGCCCGGCCCTGGAAACTCGTATATTATCGAGCAAAGAAGATGTTCGATGTCAACAATTACAAAGGCAG
Seq A exon
GTACAGCAAAGGAGATACCGAGAAGTTGAAGATATACCAGTCCCTGCACGGGAACGACTGGAAGAAGATTGGCGAGATGGTGTCTCGAAGCAGCCTCTCTGTGGCCCTGAAGTTCTCCCAGATCAACGGTC
Seq C2 exon
AAATTAATCATGGTGCCTGGAGCAAGACGGAAACCCAGAAACTAATCAAGGCTGTTGAAGAAGTGATTCTGAAGAAAATGTCTCCCCAGGAGCTAAACGAGATGGATTCTAAACTGCAGCTGAACCCTGAAGGCCGCCTGTCGATTGTTCGGGAGAAGCTCTACAAAGGCATATCCTGGGTAGAAGTGGAGGCTAGAGTGGAAACCAGGAATTGGATGCAGTGTAAAAGTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018710-'12-11,'12-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
PF139211=Myb_DNA-bind_6=PU(74.1=95.6)
C2:
PF139211=Myb_DNA-bind_6=PD(24.1=17.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCCTGGAAACTCGTATAT
R:
GCCTCCACTTCTACCCAGGAT
Band lengths:
258-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]