GgaEX7009794 @ galGal4
Exon Skipping
Gene
ENSGALG00000027242 | TTF1
Description
transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:HGNC:12397]
Coordinates
chr17:6523179-6524305:-
Coord C1 exon
chr17:6524227-6524305
Coord A exon
chr17:6523841-6523971
Coord C2 exon
chr17:6523179-6523407
Length
131 bp
Sequences
Splice sites
3' ss Seq
GTGCCCATTTCTTCTATTAGGTA
3' ss Score
8.09
5' ss Seq
CACGTATGT
5' ss Score
7.26
Exon sequences
Seq C1 exon
CTGAGGGCATACCACGAGCCTGGAGACTTATATATTACCGAGCAAGGAAGATATTTGACCCAAATAATTACAAAGGGAG
Seq A exon
GTATACTAAAGAAGAAAAAGAAAGATTGAAGAGGTACCATGCTGTCCATGGCAACGATTGGAAGAAGATTGCTGAGAAGATGTCCCGTTCTAATCTCTCTGTTGCCATGAAATACTCTGAAATCAAATCAC
Seq C2 exon
CAATTAATTATGGTCCTTGGTCAAAAGAAGAGATCCAAAGGTTGATGCGTGCAGTGGAGGAAGTGATTATAAAAAGAACAAAACTGGAAAATGCAAATTCTCTTTCCTCATCCAAAAAATCTCATAGAAGTCTCCAGATTGACCGTGAGAAACTTTTCCAGAAATTACCATGGACTGAGATTGAAACTAAAGTGGGCACTAGGTATTGGAGACAATGTAAGCAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027242-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF139211=Myb_DNA-bind_6=PU(74.1=95.6)
C2:
PF139211=Myb_DNA-bind_6=PD(24.1=18.2),PF131691=Poxvirus_B22R_N=PU(78.4=75.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGCAAGGAAGATATTTGACC
R:
TGTCTCCAATACCTAGTGCCCA
Band lengths:
257-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]