RnoEX6016189 @ rn6
Exon Skipping
Gene
ENSRNOG00000039777 | Ttf1
Description
transcription termination factor 1 [Source:RGD Symbol;Acc:1565673]
Coordinates
chr3:7646355-7648909:+
Coord C1 exon
chr3:7646355-7646433
Coord A exon
chr3:7647999-7648129
Coord C2 exon
chr3:7648675-7648909
Length
131 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTCCTTCTCTTCAGGTA
3' ss Score
12.6
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGAAGGGCATTGCTCGGCCCTGGAAGCTTGTGTACTATCGTGCAAAGAAGATATTTGATGTGAATAATTACAAAGGCAG
Seq A exon
GTACAATGAGGAAGATACTAAGAAGCTGAAGGCCTACCATTCCCTCCATGGAAATGACTGGAAAAAGATTGGGGCCATGGTAGCCCGAAGCAGCCTTTCAGTTGCCCTCAAGTTCTCTCAGATTGATGGTG
Seq C2 exon
ATAGAAACCATGGCACTTGGAGTAAGGCAGAAACTCAGAGGCTGATCAAGGCTGTGGAGGATGTGATTCTAAAGAAGATGTCTTCCCAAGAATTAAGAGAACTAGATTCTAGACTCCAGGAAGACCCTGAAGGTCGCCTGTCGATTGTCCGGGAAAAACTCTATAAGGGCATATCATGGGTGGAGGTGGAAGCTAGAGTGGAGACCCGGAACTGGATGCAGTGCAAAAGTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039777-'9-7,'9-6,11-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
PF139211=Myb_DNA-bind_6=PU(74.1=95.6)
C2:
PF139211=Myb_DNA-bind_6=PD(24.1=17.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTGGAAGCTTGTGTAC
R:
CCTCCACCCATGATATGCCCT
Band lengths:
250-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]