MmuEX6100048 @ mm10
Exon Skipping
Gene
ENSMUSG00000026803 | Ttf1
Description
transcription termination factor, RNA polymerase I [Source:MGI Symbol;Acc:MGI:105044]
Coordinates
chr2:29071298-29074808:+
Coord C1 exon
chr2:29071298-29071376
Coord A exon
chr2:29073889-29074019
Coord C2 exon
chr2:29074574-29074808
Length
131 bp
Sequences
Splice sites
3' ss Seq
AATCATTTTCCTTCTCTCAGGTA
3' ss Score
9.78
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
GGAAGGGCATCGCTCGGCCCTGGAAGCTCGTGTACTACCGTGCAAAGAAGATCTTTGATGTGAATAACTACAAAGGCAG
Seq A exon
GTACAATGAAGAAGATACTAAGAAGCTGAAGGCATACCATTCCCTCCATGGAAACGACTGGAAAAAGATTGGGGCCATGGTGGCCCGAAGCAGCCTCTCAGTCGCCCTCAAGTTCTCTCAGATTGGTGGTA
Seq C2 exon
CTAGAAACCAAGGTGCTTGGAGTAAGGCAGAAACCCAGAGGCTAATCAAGGCTGTGGAGGACGTGATCCTAAAGAAGATGTCTCCCCAGGAGTTAAGAGAACTGGATTCTAAACTCCAGGAAGACCCTGAGGGTCGCCTGTCAATTGTCCGGGAAAAACTCTACAAGGGCATATCTTGGGTGGAGGTGGAAGCTAGAGTGGAGACCCGGAACTGGATGCAGTGCAAAAGTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026803-'9-9,'9-7,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
PF139211=Myb_DNA-bind_6=PU(74.1=95.6)
C2:
PF139211=Myb_DNA-bind_6=PD(24.1=17.7)
Main Skipping Isoform:
ENSMUST00000100237fB4326
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTCGTGTACTACCGTGC
R:
ACTCTAGCTTCCACCTCCACC
Band lengths:
256-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types