BtaEX6046973 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018710 | TTF1
Description
Bos taurus transcription termination factor, RNA polymerase I (TTF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102083]
Coordinates
chr11:102493466-102499027:-
Coord C1 exon
chr11:102498897-102499027
Coord A exon
chr11:102496890-102497124
Coord C2 exon
chr11:102493466-102493555
Length
235 bp
Sequences
Splice sites
3' ss Seq
CCATCCTTTTATGTCAACAGAAA
3' ss Score
8.21
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTACAGCAAAGGAGATACCGAGAAGTTGAAGATATACCAGTCCCTGCACGGGAACGACTGGAAGAAGATTGGCGAGATGGTGTCTCGAAGCAGCCTCTCTGTGGCCCTGAAGTTCTCCCAGATCAACGGTC
Seq A exon
AAATTAATCATGGTGCCTGGAGCAAGACGGAAACCCAGAAACTAATCAAGGCTGTTGAAGAAGTGATTCTGAAGAAAATGTCTCCCCAGGAGCTAAACGAGATGGATTCTAAACTGCAGCTGAACCCTGAAGGCCGCCTGTCGATTGTTCGGGAGAAGCTCTACAAAGGCATATCCTGGGTAGAAGTGGAGGCTAGAGTGGAAACCAGGAATTGGATGCAGTGTAAAAGTAAGTG
Seq C2 exon
GACGGAAATTCTAACCAAGAGGATGACGAATGGTCGGGACGTGTACCGAGGAGTGAACGCTCTGCAGGCCAAGATCAATCTGATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018710-'14-14,'14-11,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=PU(74.1=95.6)
A:
PF139211=Myb_DNA-bind_6=PD(24.1=17.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAAAGGAGATACCGAGA
R:
TCAGATTGATCTTGGCCTGCA
Band lengths:
212-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]