RnoEX0094908 @ rn6
Exon Skipping
Gene
ENSRNOG00000039777 | Ttf1
Description
transcription termination factor 1 [Source:RGD Symbol;Acc:1565673]
Coordinates
chr3:7647999-7652747:+
Coord C1 exon
chr3:7647999-7648129
Coord A exon
chr3:7648675-7648909
Coord C2 exon
chr3:7652658-7652747
Length
235 bp
Sequences
Splice sites
3' ss Seq
TCATCCTTTTATGTCTGCAGATA
3' ss Score
10.34
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTACAATGAGGAAGATACTAAGAAGCTGAAGGCCTACCATTCCCTCCATGGAAATGACTGGAAAAAGATTGGGGCCATGGTAGCCCGAAGCAGCCTTTCAGTTGCCCTCAAGTTCTCTCAGATTGATGGTG
Seq A exon
ATAGAAACCATGGCACTTGGAGTAAGGCAGAAACTCAGAGGCTGATCAAGGCTGTGGAGGATGTGATTCTAAAGAAGATGTCTTCCCAAGAATTAAGAGAACTAGATTCTAGACTCCAGGAAGACCCTGAAGGTCGCCTGTCGATTGTCCGGGAAAAACTCTATAAGGGCATATCATGGGTGGAGGTGGAAGCTAGAGTGGAGACCCGGAACTGGATGCAGTGCAAAAGTAAGTG
Seq C2 exon
GACAGAGATTCTTACCAAAAGGATGACCCATGGTGGGTTCGTGTATCGTGGGGTCAAGGCTCTACAGGCCAAAATAACTCTTATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039777_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=PU(74.1=95.6)
A:
PF139211=Myb_DNA-bind_6=PD(24.1=17.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAATGAGGAAGATACTAAGAAGC
R:
TTTCAATAAGAGTTATTTTGGCCTGT
Band lengths:
220-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]