HsaEX6063647 @ hg38
Exon Skipping
Gene
ENSG00000125482 | TTF1
Description
transcription termination factor 1 [Source:HGNC Symbol;Acc:HGNC:12397]
Coordinates
chr9:132388139-132392206:-
Coord C1 exon
chr9:132392076-132392206
Coord A exon
chr9:132390597-132390831
Coord C2 exon
chr9:132388139-132388228
Length
235 bp
Sequences
Splice sites
3' ss Seq
CCATCTTTTTATATCTACAGAAA
3' ss Score
8.92
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTATAGCGAAGGAGATACTGAGAAGTTAAAGATGTACCATTCTCTCCTTGGGAATGACTGGAAGACGATTGGTGAGATGGTGGCCCGAAGTAGCCTCTCCGTGGCCCTCAAGTTCTCACAGATCAGCAGTC
Seq A exon
AAAGAAATCGTGGTGCTTGGAGTAAGTCTGAAACCCGGAAACTAATCAAGGCTGTCGAAGAAGTGATTCTGAAGAAGATGTCTCCCCAGGAGTTAAAAGAGGTGGATTCCAAACTCCAAGAAAATCCTGAAAGTTGCCTATCAATTGTTCGGGAAAAACTCTACAAGGGCATATCTTGGGTAGAAGTAGAAGCTAAAGTGCAAACCAGAAATTGGATGCAGTGTAAAAGTAAGTG
Seq C2 exon
GACAGAAATTCTAACCAAGAGGATGACTAATGGTCGGCGTATCTACTATGGCATGAATGCCCTGCGGGCCAAGGTCAGCCTTATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125482-'21-13,'21-12,24-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=PU(74.1=95.6)
A:
PF139211=Myb_DNA-bind_6=PD(24.1=17.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATAGCGAAGGAGATACTGAGAAGT
R:
TTCATGCCATAGTAGATACGCCG
Band lengths:
188-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains