GgaEX7009795 @ galGal4
Exon Skipping
Gene
ENSGALG00000027242 | TTF1
Description
transcription termination factor, RNA polymerase I [Source:HGNC Symbol;Acc:HGNC:12397]
Coordinates
chr17:6522900-6523971:-
Coord C1 exon
chr17:6523841-6523971
Coord A exon
chr17:6523179-6523407
Coord C2 exon
chr17:6522900-6522989
Length
229 bp
Sequences
Splice sites
3' ss Seq
TAAATATTTTTGAATTTTAGCAA
3' ss Score
6.25
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GTATACTAAAGAAGAAAAAGAAAGATTGAAGAGGTACCATGCTGTCCATGGCAACGATTGGAAGAAGATTGCTGAGAAGATGTCCCGTTCTAATCTCTCTGTTGCCATGAAATACTCTGAAATCAAATCAC
Seq A exon
CAATTAATTATGGTCCTTGGTCAAAAGAAGAGATCCAAAGGTTGATGCGTGCAGTGGAGGAAGTGATTATAAAAAGAACAAAACTGGAAAATGCAAATTCTCTTTCCTCATCCAAAAAATCTCATAGAAGTCTCCAGATTGACCGTGAGAAACTTTTCCAGAAATTACCATGGACTGAGATTGAAACTAAAGTGGGCACTAGGTATTGGAGACAATGTAAGCAGAAATG
Seq C2 exon
GACTTCAATTTTAACCAACAAGATTACCAAAGGGCAGCAGTTACACAGGGGAACCAAAGGATTGCAAGCCAGCATCAACCTTATTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027242-'6-7,'6-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=PU(74.1=95.6)
A:
PF139211=Myb_DNA-bind_6=PD(24.1=18.2),PF131691=Poxvirus_B22R_N=PU(78.4=75.3)
C2:
PF131691=Poxvirus_B22R_N=PD(20.3=48.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAAAAGAAAGATTGAAGAGGT
R:
CTTTTAATAAGGTTGATGCTGGCT
Band lengths:
212-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]