BtaEX6047079 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006558 | SOHLH1
Description
spermatogenesis and oogenesis specific basic helix-loop-helix 1 [Source:HGNC Symbol;Acc:HGNC:27845]
Coordinates
chr11:103346206-103347848:-
Coord C1 exon
chr11:103347604-103347848
Coord A exon
chr11:103347113-103347183
Coord C2 exon
chr11:103346206-103346517
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTCGTCCTGTCCAGGTC
3' ss Score
11.24
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGGGGGGGGCTCATTCTTCTTTACCCACTCCTTGCTTCCCTCGTAGAGTCACCCAGCCTCGTCCCCCAGTCCCCAGGCCCGAGACCCCCCAAGGTCCTGAGGCCGTCCCCTCTGTGGCCGGTCCGCTCGCAGCAGTCCCCTTCCCCACTGGTGAGTGAGGAGCCCCGGAGCTGCCTGGGCCAGGCGGGGCCCCCCACTACGAGGGCTGACAAGGCCCTGATGCCGGACTCCAGGTGGGTGCCCGG
Seq A exon
GTCTGTGTCGGGATGTGACGTGGCAGATGGTGCGTCTGTTCTGCTGAGCCCTGGGCCTGACTGGTGGTTGG
Seq C2 exon
GGTCCCTGGAGGGCAGAGGCAGCGGCGCCCCTTCTCGGGTAGCCACCAGGAACAGCCCGCTGGACAGGCTCGAGCCGGGCTTCCTGGGAGACCCCGAGTCTGGCCCCCAGGAGGAGTCCCCGGACGGGCCCCTGGAGCCGTGGGGCTCGGATGGGAGCTGCTCCAGCCCAGTCCTGCGGGATGAGGTGGACAGCATCTTCCCCGACTTCTTCGCCTGCTGAGACCAGGGGAACGGGACCTTTTCGGCAGCACGTGCCACACACTCGGGCGGGGTTTTATTCTGGGTTTGGGCTGCAGCTGTGGTCTAATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006558-'5-7,'5-5,6-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=0.200 C2=0.767
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTACGAGGGCTGACAAGG
R:
GTCCGGGGACTCCTCCTG
Band lengths:
177-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]