RnoEX0084734 @ rn6
Exon Skipping
Gene
ENSRNOG00000033983 | Sohlh1
Description
spermatogenesis and oogenesis specific basic helix-loop-helix 1 [Source:RGD Symbol;Acc:1564440]
Coordinates
chr3:3291084-3293251:-
Coord C1 exon
chr3:3293154-3293251
Coord A exon
chr3:3291781-3291857
Coord C2 exon
chr3:3291084-3291286
Length
77 bp
Sequences
Splice sites
3' ss Seq
GGGGATCTTCTCATCTCCAGGTA
3' ss Score
8.33
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGTGCAGGACCCCCCATGCTGTGGCATGCTGGATACAGACCAGAGCCAAGCTACTGAGAGGGCGTCGGAGCTTCTGGAGAGGCCTTCCTCCTGCCCTG
Seq A exon
GTACACCACAGGGGCAGGGTCCGAAGTGGTGGACGGAGCATCCTTTCTGCTGACCACCAATCCTGATTGGTGGTTGG
Seq C2 exon
GGTCAGTGGAGGGCAGAGGAGGACCAGCTCTTGCCAGGAACAGCCCAGTGGATGGGGCAGAGCCAATCTACATTGGAGACCCTGAGCCCTGCTCCCAGGAGCTCCAGGCTGGCCCCGTAGAGCTGTGGGGCTTGGATTTTGGCAGCCCTGGCCTGGCCCTGAAGGATGAAGCAGACAGCATCTTCCCTGACTTTTTCCCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033983_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.913 A=0.185 C2=0.478
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTCTGGAGAGGCCTTCC
R:
AAAATCCAAGCCCCACAGCTC
Band lengths:
171-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]