MmuEX0044338 @ mm10
Exon Skipping
Gene
ENSMUSG00000059625 | Sohlh1
Description
spermatogenesis and oogenesis specific basic helix-loop-helix 1 [Source:MGI Symbol;Acc:MGI:2684956]
Coordinates
chr2:25842995-25845395:-
Coord C1 exon
chr2:25845262-25845395
Coord A exon
chr2:25843924-25844000
Coord C2 exon
chr2:25842995-25843359
Length
77 bp
Sequences
Splice sites
3' ss Seq
GGGGATCTTTTCATCTCCAGGTA
3' ss Score
8.94
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGTACAGGATCCCCCATGCTTTGGGATGCTGGATACAGACCAGAGCCAGGCTACTGAGAGAGAGTCAGAGCTGCTGGAGAGACCTTCCTCCTGCCCTGGTCATCGCCAGAGCGCGTTGTCATTCAGTGAGCCAG
Seq A exon
GTACACCACAGGGGCAGGGTCCGATGTGGTGGATGGAGCACCCTTTCTGATGACCACCAATCCTGACTGGTGGTTGG
Seq C2 exon
GGTCGGTGGAGGGCAGAGGAGGCCCAGCCCTTGCCAGGAGCAGCCCAGTGGATGGGGCAGAGCCAAGCTTCATCGGAGACCCTGAGCTTTGCTCCCAGGAGCTCCAGGCTGGTCCTGGAGAGCTGTGGGGTTTGGATTTTGGCAGCCCTGGCCTGGCCCTGAAGGATGAAGCGGACAGCATCTTCCCTGACTTTTTCCCCTGATAGCTGAGTCCCCCAGAGTTTAGTTTGCTGGGGAGCTGTCCTGTGCCTGGGTGTTGTATTTTGGGCTTGGTTTGCAGCTGAGGCCTAATTTGAGGGAGCCTGGCAGGGCTGTGAGTGGAGTTTGTATTAAAGAGGAAAGTGGTTTTTCTGGCAGAAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059625_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.370 C2=0.463
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACAGACCAGAGCCAGG
R:
CTCCGATGAAGCTTGGCTCTG
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types