HsaEX6063926 @ hg19
Exon Skipping
Gene
ENSG00000165643 | SOHLH1
Description
spermatogenesis and oogenesis specific basic helix-loop-helix 1 [Source:HGNC Symbol;Acc:27845]
Coordinates
chr9:138585257-138587109:-
Coord C1 exon
chr9:138586896-138587109
Coord A exon
chr9:138586233-138586303
Coord C2 exon
chr9:138585257-138585660
Length
71 bp
Sequences
Splice sites
3' ss Seq
GAAGAGCTTGTCGCTTCCAGGTC
3' ss Score
5.34
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
AACCTTCCAGCCTGGTGCCGTGGCCCCCAGGCCGGAGTCTTCCTAAGGCTGTGAGGCCACCCCTGTCCTGGCCTCCGTTCTCGCAGCAGCAGACCTTGCCCGTGATGAGCGGGGAGGCCCTTGGCTGGCTGGGCCAGGCTGGGCCCCTGGCCATGGGGGCTGCACCTCTGGGGGAGCCAGCCAAGGAGGACCCCATGCTGGCGCAGGAGGCCGG
Seq A exon
GTCTGCGTTGGGGTCTGATGTGGACGATGGGACGTCCTTCCTGCTGACTGCTGGTCCCAGCTCGTGGCCGG
Seq C2 exon
GGTCTCTGGAGGGTCGAGGAGGCAGTGGCCCTGCATGGGCCCCAGCTGAGAGCAGTCCACTGGATGTTGGAGAGCCAGGCTTCCTAGGGGACCCTGAGCTTGGCTCCCAGGAGCTCCAGGACAGCCCTCTGGAGCCGTGGGGCCTGGATGTGGACTGTGCAGGCCTGGCCCTGAAGGACGAGGTGGAGAGCATCTTCCCTGACTTCTTTGCCTGCTAGCAGCCAGGCTGTGGAGAGGAGGCGGGCGGGGCCGGTGGATCTGGAGCCGTGTGTGTCCCTGTCGCGTGCTTGGGCATTTTATTTTGGGTTTGGGTTGCAGCTGCACCCTAATTTGAGCGAGGCTTACAGGCTGTGAGAAGAGGATAGTGAATATTAAAGAGGGAAAGCAGTTTTCCTGGAGGAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165643-'5-6,'5-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=0.727 C2=0.653
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCTGGCCTCCGTTCTC
R:
CTCCTCGACCCTCCAGAGAC
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)