BtaEX6047125 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103756262-103758556:-
Coord C1 exon
chr11:103758466-103758556
Coord A exon
chr11:103757580-103757725
Coord C2 exon
chr11:103756262-103756396
Length
146 bp
Sequences
Splice sites
3' ss Seq
CGTGCCGTCTCATCGCCCAGGTG
3' ss Score
8.88
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
Exon sequences
Seq C1 exon
GCCCAGTGACGTCCTTTCACTCATCGACAAGCGAGGTGACCGGTACGTGGCTGTGCTGTTGGAAGATGACAGCTCCTACGTCGGACGCGAG
Seq A exon
GTGATCTTGGACCTGATTCCATACGAGAGCATCGAGGTGAGGCGGGCGCTGGGTTCCGACACAGCCTTCCTGCAGAAGCTCGGCGTGCCCTCCCTTCCCTCCTGCTACCTGATCTACCCGAACGGGTCGCACGGACCAGTCACCGT
Seq C2 exon
TGGGAAGCCCCTCCGGTCGTTTTTCTCCTCTTACCTGAGGTCACTGCCGGGAGTGAGGAAGAAACCAGGTTCCCTTCCTGGGAGACCCAGCAGAGACGAGAGCTCGGAAGCCGTGGTCTGGAGGGACTTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129-'10-9,'10-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.174
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000042859fB5669
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGTGACGTCCTTTCAC
R:
CTGTCAAAGTCCCTCCAGACC
Band lengths:
226-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]