RnoEX6015944 @ rn6
Exon Skipping
Gene
ENSRNOG00000018574 | Qsox2
Description
quiescin sulfhydryl oxidase 2 [Source:RGD Symbol;Acc:1584720]
Coordinates
chr3:3674965-3677751:-
Coord C1 exon
chr3:3677661-3677751
Coord A exon
chr3:3676100-3676245
Coord C2 exon
chr3:3674965-3675099
Length
146 bp
Sequences
Splice sites
3' ss Seq
CATGCCTCTTTGTTCTGCAGGTG
3' ss Score
12.05
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GTCCAGTGACATCCTTTCCTTCATGGACAGCCACAGTGGCCAGTACCATGCTGTTGTATTTGAAAGCAACGGTTCTTATGTTGGACGAGAG
Seq A exon
GTGATCTTAGATTTGATTCCATATGACAACATCATGGTGAGCCGAGCACTGGATACGGACAAAGCATTTCTGGGGACCCTTGGCATTTCGTCAGTTCCTTCCTGTTACTTGATTTACCCAAATGGGTCTCATGGTCTGGTTAATGT
Seq C2 exon
TGCAAAGCCTCTACGGTCGTTTTTCTCCTCTTATTTAAAATCCTTACCAGATGTGAGGAAAAAGTCACTTTCCTTGCCTGAAAAGCCCAACAAAGAAGAAAATTCAGAGGTTGTGATTTGGAAAGAATTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018574-'7-6,'7-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGTGACATCCTTTCCTTCA
R:
CTGTCAAATTCTTTCCAAATCACAAC
Band lengths:
226-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]