MmuEX6099674 @ mm10
Exon Skipping
Gene
ENSMUSG00000036327 | Qsox2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:MGI Symbol;Acc:MGI:2387194]
Coordinates
chr2:26220909-26224931:-
Coord C1 exon
chr2:26224841-26224931
Coord A exon
chr2:26222221-26222366
Coord C2 exon
chr2:26220909-26221043
Length
146 bp
Sequences
Splice sites
3' ss Seq
TAACACAACTTCTTCTGCAGGTG
3' ss Score
8.39
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GTCCAGTGACATCCTTTCCTTCATGGATAGCCACAGTGGCCAATACCATGCTATTGTGTTTGAAAGCAATGGTTCTTATGTTGGACGAGAG
Seq A exon
GTGATCTTAGATTTGATTCCATATGAAAACATCATGGTGAGCCGAGCACTGGATACGGACAAAGCATTTCTGGGGACACTTGGCATTACTTCAGTGCCTTCCTGTTACTTGATTTACCCAAATGGGTCTCATGGACTGGTTAATGT
Seq C2 exon
TGCAAAGCCTCTACGATCGTTTTTCTCCTCTCATTTAAAATCCTTACCAGATGTAAGGAAAAAGTCACTTTTCTTGCCTGAAAAGTCCAACAAAGAAGAAAAATCAGAGGTGGTGGTTTGGAAAGAATTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036327-'9-9,'9-7,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGTGACATCCTTTCCTTCA
R:
CTGTCAAATTCTTTCCAAACCACCA
Band lengths:
226-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types