GgaEX1047588 @ galGal3
Exon Skipping
Gene
ENSGALG00000001758 | QSOX2
Description
NA
Coordinates
chr17:8716326-8718526:+
Coord C1 exon
chr17:8716326-8716416
Coord A exon
chr17:8717886-8718031
Coord C2 exon
chr17:8718383-8718526
Length
146 bp
Sequences
Splice sites
3' ss Seq
GTTACTTTTTTGTTACCCAGGTT
3' ss Score
6.54
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTCCAGTGATGTTACTTCTCTCTTTGACGAGAAAGCCCCTCATTATACTGCCATTGTGGTTGAAAGTAATAACTCCTACATTGGACGAGAG
Seq A exon
GTTATCTTAGATTTGATCCCATATGAAAACATTGTTGTGAAGAGAGCACTGAATTTTGATAAGCCTTTCCTAGAGAAACTTGGGATTACCTCAGTCCCTTCGTGCTACCTGATGCATCCTAATGGATCACATGGGTTAGTTAACAG
Seq C2 exon
TCTGAAGCCCCTACGGTCGGTCTTTTCTTCATATTTGAAGTCTCTGCCAGGTGTAAGAAAGAAACTTCTTTCACCACTTGAGCTGCCTGTTAAAGAAAACAAAGAGGAGAGCACAGAGATCAAGCTGTGGAAGGAGTTTGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGTGATGTTACTTCTCTCT
R:
TATCAAACTCCTTCCACAGCTTGA
Band lengths:
234-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]