BtaEX6047192 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001353 | PMPCA
Description
Bos taurus peptidase (mitochondrial processing) alpha (PMPCA), mRNA. [Source:RefSeq mRNA;Acc:NM_001076964]
Coordinates
chr11:103920413-103922029:+
Coord C1 exon
chr11:103920413-103920507
Coord A exon
chr11:103921287-103921387
Coord C2 exon
chr11:103921766-103922029
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTCGGTTTGGTTCTTTGCAGACG
3' ss Score
8.52
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AGACACCACCATGTATGCTGTGTCTGCTGATTCTAAGGGCCTGGACACAGTGGTAGGCTTGCTGGCAGACGTGGTCCTGCACCCCAGGCTGACAG
Seq A exon
ACGAGGAAATTGAGATGGCGCGCATGGCTGTGCAGTTTGAGCTGGAGGACCTCAACATGCGGCCCGACCCGGAGCCGCTCCTCACCGAGATGGTTCACGAG
Seq C2 exon
GCGGCGTACAGGGAAAACACGGTGGGGCTCCACCGTTTCTGCCCCGCGGAGAACGTCGGAAAGATGGACCGGGACGTGCTGCACGCTTACCTGAGGAACTACTACACCCCTGACCGCATGGTGCTGGCCGGGGTAGGGGTGGAGCACGCACAGCTGGTCGAGTGCGCCCGGAAGTACCTCCTGGGGACCTGTCCCGCCTGGGGCACGGGGGCGGCCGTGCACGTGGACAGATCGGTGGCTCAGTACACTGGGGGCATCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001353-'5-8,'5-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.176 C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=FE(21.2=100)
A:
PF0067515=Peptidase_M16=FE(21.9=100)
C2:
PF0067515=Peptidase_M16=PD(9.9=17.0),PF0519316=Peptidase_M16_C=PU(33.5=76.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACAGTGGTAGGCTTGCTG
R:
CAGGTCCCCAGGAGGTACTTC
Band lengths:
243-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]