RnoEX0067594 @ rn6
Exon Skipping
Gene
ENSRNOG00000026775 | Pmpca
Description
peptidase, mitochondrial processing alpha subunit [Source:RGD Symbol;Acc:727897]
Coordinates
chr3:3835997-3837648:+
Coord C1 exon
chr3:3835997-3836091
Coord A exon
chr3:3836799-3836899
Coord C2 exon
chr3:3837385-3837648
Length
101 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCTGGACTTTTGCAGATG
3' ss Score
9.19
5' ss Seq
GAAGTAACA
5' ss Score
1.06
Exon sequences
Seq C1 exon
AGACACCACCATGTATGCTGTGTCTGCTGACAGCAAAGGCTTGGACACTGTGGTGGGCCTGCTGGCTGATGTGGTTCTGCACCCCCGCCTGACAG
Seq A exon
ATGAGGAAATTGAGATGACGAGGATGGCTGTTCAGTTTGAACTTGAGGACCTGAACATGAGACCTGACCCAGAGCCACTGCTCACCGAGATGATTCATGAA
Seq C2 exon
GCTGCTTTTAGGGAGAACACGGTGGGCCTGCACCGGTTTTGTCCTGTAGAGAACATAGGGAAGATTGACCGAGAAGTGCTGCATTCCTACCTGAAGAACTACTACACCCCCGACCGCATGGTGCTTGCTGGAGTGGGCGTGGAGCATGAGCACCTGGTCGAATGTGCCAGAAAGTACCTCCTGGGAGTGCAGCCTGCCTGGGGAGCTCCGGGAGCTGTGGATGTTGACAGCTCAGTGGCACAGTACACGGGGGGGATCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026775_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=FE(21.2=100)
A:
PF0067515=Peptidase_M16=FE(21.9=100)
C2:
PF0067515=Peptidase_M16=PD(9.9=17.0),PF0519316=Peptidase_M16_C=PU(33.5=76.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGCTTGGACACTGTGGT
R:
CTGCACTCCCAGGAGGTACTT
Band lengths:
254-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]