GgaEX1044769 @ galGal4
Exon Skipping
Gene
ENSGALG00000001950 | PMPCA
Description
mitochondrial-processing peptidase subunit alpha [Source:RefSeq peptide;Acc:NP_001006197]
Coordinates
chr17:7887576-7888538:-
Coord C1 exon
chr17:7888444-7888538
Coord A exon
chr17:7888190-7888290
Coord C2 exon
chr17:7887576-7887839
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTCTCTTATTACAGATG
3' ss Score
11.15
5' ss Seq
GCGGTAAAA
5' ss Score
4.94
Exon sequences
Seq C1 exon
GGACACCATCATGTATGCTGTTTCTGCTGATGCCAAAGGCTTGGACACAGTGGTCAACTTGCTGGCCGACGTAGCCCTGCAGCCCAGGTTATCAG
Seq A exon
ATGAAGAAATTGAGATGACTCGAATGGCTATACGGTTTGAGCTCGAGGACTTGAACATGAGACCTGATCCTGAGCCTCTCCTCACAGAGATGATCCATGCG
Seq C2 exon
GCAGCCTACAGAGAAAATACAGTTGGACTGAAGAGGTTCTGCCCAGTGGAAAACACTGACAAAATTGATCAGAAAGTCCTGCACTCATACCTGCGCAATTACTATACGCCGGACAGGATGGTGCTGGCAGGGGTGGGAATTGAGCACGAGCAGTTGGTGGAGTGTGCGAAGAAATATCTGCTTGGAGTGGAGCCAGTGTGGGGTAGTGCACAGACCAAGGAGGTGGACAGGTCTGTGGCTCAGTACACAGGAGGCATTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001950-'7-8,'7-6,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=FE(21.2=100)
A:
PF0067515=Peptidase_M16=FE(21.9=100)
C2:
PF0067515=Peptidase_M16=PD(9.9=17.0),PF0519316=Peptidase_M16_C=PU(33.5=76.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACACAGTGGTCAACTTGC
R:
TGGCTCCACTCCAAGCAGATA
Band lengths:
249-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]