BtaEX6047226 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022799 | NOTCH1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSM3]
Coordinates
chr11:104010796-104028839:-
Coord C1 exon
chr11:104028758-104028839
Coord A exon
chr11:104011701-104011963
Coord C2 exon
chr11:104010796-104011134
Length
263 bp
Sequences
Splice sites
3' ss Seq
CCCTGGCGTGTCTGCTACAGCTG
3' ss Score
8.56
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCCTGCGCTGCTCCCAGCCCGGTGAGACCTGCTTGAACGGTGGGAAGTGTGAAGTGTTCCCCAACGGCACCGAGGCCTGCAT
Seq A exon
CTGCGGCGGGGCCTTCGCGGGCCAGCAATGCCAGGCCCCCAACCCCTGCCTCAGCGCCCCCTGCAAGAACGGCGGGACGTGCCACACGACGGAGCGAGAAGGCCTGGTGGACTATGTCTGCGGCTGCCGCCTGGGCTTCTCGGGGCCACTGTGCCTGACGCCCCGCGACCACGCTTGCCTCGCCAGCCCCTGCCTCAACGGTGGCACCTGTGATCTGCTCACGCTCACTGAGTACAAGTGCCTGTGCACCCCGGGCTGGTCAG
Seq C2 exon
GGAAGACGTGCCAGCAGGCCGACCCCTGCGCCTCCAACCCCTGTGCCAACGGTGGCCAGTGCCTGCCCTTTGAGGCGTCGTATATCTGCCACTGCCCGCCCGGCTTCCACGGCCCCACGTGCAGGCAGGACGTCAACGAGTGCAGCCAGAGCCCCGGGCTCTGCCACCACGGCGGCACCTGCCTCAACGAGGTCGGCTCCTACCGCTGCGTCTGCCGCCCCACCCACACCGGCCCCCACTGCGAGCTGCCCTACGTGCCCTGCAGTCCCTCCCCCTGCCAGAACGGGGGCACCTGCCGCCCCACGGGGGACACCACCCACGAGTGCGCCTGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022799-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=42.7),PF0000822=EGF=PU(90.6=32.6)
C2:
PF0000822=EGF=PD(6.2=1.8),PF0000822=EGF=WD(100=27.2),PF0764510=EGF_CA=WD(100=34.2),PF0000822=EGF=PU(81.2=22.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGTGTGAAGTGTTCCCC
R:
GTAGGGCAGCTCGCAGTG
Band lengths:
295-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]