DreEX6014324 @ danRer10
Exon Skipping
Gene
ENSDARG00000052094 | notch1b
Description
notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
Coordinates
chr5:65069644-65099148:-
Coord C1 exon
chr5:65099076-65099148
Coord A exon
chr5:65071956-65072218
Coord C2 exon
chr5:65069644-65069982
Length
263 bp
Sequences
Splice sites
3' ss Seq
GGCTTGTTTCCACTCTACAGGTG
3' ss Score
8.72
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCTGGAATGTTCAGAAAAATGCCAAAACGGAGGCACATGTGAACCAACTGCAGACGGGAGAGGAGAATGCAA
Seq A exon
GTGTCTGGATCTGTACGCCGGCCCAGCGTGCCAGTTCCGCAACCCTTGCTTCCAATCCCCGTGCAGAAATGGTGGCGTGTGCCGTTTGATCACTTCTGCCAACAAGGTGGACTTTGTCTGCAACTGCAGCCTGGGCTACACGGACCGATTGTGCCTCACTCCCACCAACAACGTGTGCCTTGGTGCTCCGTGCCGAAACGGAGGAACGTGCGAACTCACCAGCATCCACAACTACAGGTGTAAATGCCCACCAGGCTGGTCAG
Seq C2 exon
GTAAAACCTGCCAGCAAGCTGATCCCTGTGCCTCGAATCCTTGTGCCAATGGTGGTCAGTGTAGCCCCTTTGATTCGGACTTCCTCTGCCACTGTACACCTTACTTCTCAGGCCAAACCTGCAAACAAGATGTCAACGAGTGCGCGCAGATTCCCTCTCCGTGTAAGAACGGTGGCGTGTGTGAGAACGGAGTGGGCACGTATCACTGCAACTGTCCCGCCGAGTACACTGGGAAACACTGCGAGAGCCTGTATCAGCCGTGTAACCCCTCGCCATGCTTACACGGGGGCACCTGCGTACAGAAGGGGGAGACCAGTTATGAGTGCTCCTGTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052094-'1-5,'1-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PU(65.6=84.0)
A:
PF079748=EGF_2=PD(31.2=11.2),PF0000822=EGF=WD(100=39.3),PF0000822=EGF=PU(91.7=37.1)
C2:
PF0000822=EGF=PD(5.6=1.8),PF0000822=EGF=WD(100=27.2),PF0764510=EGF_CA=WD(100=39.5),PF0000822=EGF=PU(81.2=22.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGGAGAGGAGAATGCAA
R:
GTAAGCATGGCGAGGGGTTAC
Band lengths:
303-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]