RnoEX6015993 @ rn6
Exon Skipping
Gene
ENSRNOG00000019322 | Notch1
Description
notch 1 [Source:RGD Symbol;Acc:3187]
Coordinates
chr3:3931623-3949223:-
Coord C1 exon
chr3:3949145-3949223
Coord A exon
chr3:3932537-3932799
Coord C2 exon
chr3:3931623-3931961
Length
263 bp
Sequences
Splice sites
3' ss Seq
CCCTACGTGTCTGTCAACAGCTG
3' ss Score
9.16
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCTTGAGATGCTCCCAGCCAAGTGGGACCTGCCTGAATGGAGGGAGGTGCGAAGTGGCCAACGGCACTGAAGCCTGTGT
Seq A exon
CTGCAGCGGAGCGTTCGTGGGCCAGCGATGCCAGGACCCCAGCCCTTGCCTCAGCACACCATGTAAGAATGCTGGAACGTGCTATGTTGTGGACCATGGCGGCATCGTGGACTATGCCTGCAGTTGCCCCCTGGGTTTCTCTGGGCCCCTCTGCCTGACACCTCTGGCCAATGCCTGCCTGGCCAACCCCTGCCGCAACGGGGGGACCTGTGACCTGCTCACTCTCACAGAATACAAGTGCCGGTGCCCGCCAGGGTGGTCAG
Seq C2 exon
GAAAGTCATGTCAGCAAGCCGACCCCTGTGCCTCCAACCCCTGTGCCAATGGTGGCCAGTGCCTGCCCTTTGAGTCTTCATACATCTGTGGCTGCCCGCCCGGCTTCCATGGCCCCACCTGCAGACAAGATGTTAACGAGTGCAGCCAGAACCCTGGGTTGTGCCGTCATGGCGGCACGTGCCACAATGAGATTGGCTCCTATCGCTGTGCCTGCCGTGCCACCCACACTGGTCCCCACTGCGAGCTGCCCTACGTGCCCTGCAGCCCCTCACCCTGCCAGAACGGAGGCACCTGCCGCCCTACGGGGGACACCACCCACGAGTGTGCCTGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019322-'2-3,'2-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=39.3),PF0000822=EGF=PU(90.6=32.6)
C2:
PF0000822=EGF=PD(6.2=1.8),PF0000822=EGF=WD(100=27.2),PF0764510=EGF_CA=WD(100=34.2),PF0000822=EGF=PU(81.2=22.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGATGCTCCCAGCCAAG
R:
CAGGCACAGCGATAGGAGC
Band lengths:
292-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]