BtaEX6047232 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022799 | NOTCH1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSM3]
Coordinates
chr11:104005919-104007243:-
Coord C1 exon
chr11:104007058-104007243
Coord A exon
chr11:104006718-104006831
Coord C2 exon
chr11:104005919-104006032
Length
114 bp
Sequences
Splice sites
3' ss Seq
GACCAGCCCGCTCCTGCCAGGCT
3' ss Score
3.69
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GCGCCAACCCCTGTGAGCACGCGGGCAAGTGCATCAACACGCTGGGCTCGTTCGAGTGCCAGTGTCTGCAGGGCTACACCGGCCCGCGCTGTGAGATCGACGTCAACGAGTGTGTATCGAACCCGTGTCAGAACGACGCCACTTGTCTGGATCAGATCGGGGAGTTCCAGTGTATCTGCATGCCTG
Seq A exon
GCTACGAGGGCTTGCACTGCGAGGTGAACACGGACGAGTGTGCCAGCAGCCCCTGCCTGCAGAACGGCCGCTGCCTGGACAAGATCAACGAGTTCGTGTGCGAGTGCCCCACTG
Seq C2 exon
GCTTCACCGGGCACTTGTGCCAGTATGACGTGGACGAGTGTGCAAGCACACCCTGCAAGAACGGCGCTAAGTGCCTGGACGGGCCCAACACCTACACCTGCGTGTGCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022799-'11-8,'11-7,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(79.5=49.2),PF0000822=EGF=PU(80.6=39.7)
A:
PF0000822=EGF=PD(16.1=12.8),PF0000822=EGF=PU(80.6=64.1)
C2:
PF0000822=EGF=PD(16.1=12.8),PF0000822=EGF=PU(80.6=64.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTTCGAGTGCCAGTGTC
R:
CACGCAGGTGTAGGTGTTGG
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]