DreEX0051121 @ danRer10
Exon Skipping
Gene
ENSDARG00000052094 | notch1b
Description
notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
Coordinates
chr5:65047063-65057410:-
Coord C1 exon
chr5:65057225-65057410
Coord A exon
chr5:65054067-65054180
Coord C2 exon
chr5:65047063-65047176
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTCCTATGTTAATTGGCAGGGT
3' ss Score
5.9
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGCAAACCCTTGTGAACATGCTGGAAAGTGTATAAACACAAAAGGCTCGTTCCAGTGTAAATGTCTGCAGGGATATGTTGGAGCTCGATGTGAGCTGGACATAAATGAGTGCCTTTCCACCCCGTGCCAAAACGACGCCACCTGTTTAGATCAGATTGGAGGATTCCATTGCATCTGTATGCCAG
Seq A exon
GGTACGAGGGAGTCTTCTGTCAGATCAATACCGATGAGTGCGCCAGCATGCCCTGCCTCAACAATGGGAAGTGCATCGACAAGATCAACAACTACCAATGCGAGTGCCCCACAG
Seq C2 exon
GATTTTCGGGGAGCCAATGCCAGTTCGACATTGACGAGTGCGCTAGTACTCCTTGTAAAAATGGGGCCAAGTGTATGGATGGGCCCAATATGTACACCTGCCAGTGCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052094_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(79.5=49.2),PF0764510=EGF_CA=PU(76.3=46.0)
A:
PF0764510=EGF_CA=PD(21.1=20.5),PF0000822=EGF=PU(80.6=64.1)
C2:
PF0000822=EGF=PD(16.1=12.8),PF0000822=EGF=PU(80.6=64.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAAGGCTCGTTCCAGTGT
R:
GCAGGTGTACATATTGGGCCC
Band lengths:
249-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]