GgaEX7009838 @ galGal4
Exon Skipping
Gene
ENSGALG00000002375 | NOTCH1
Description
notch 1 [Source:HGNC Symbol;Acc:HGNC:7881]
Coordinates
chr17:7825990-7827407:+
Coord C1 exon
chr17:7825990-7826175
Coord A exon
chr17:7826554-7826667
Coord C2 exon
chr17:7827294-7827407
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGCGCTGGGTCTGTCCACAGGAT
3' ss Score
8.93
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
GAGCCAACCCCTGTGAGCACGCAGGGAAATGCATCAACACCCAGGGGTCCTTCCAATGCCAGTGTCTGCAGGGCTACTCGGGCCCCCGCTGCGAGATCGATGTCAATGAGTGCCTCTCCAACCCCTGCCAGAACGATGCCACCTGCCTGGACCAGATCGGGGAGTTCCAGTGCATCTGCATGCCTG
Seq A exon
GATACGAGGGCGTCTACTGTGAAATCAACACAGATGAGTGTGCCAGCAGCCCCTGCCTGCACAATGGCAACTGCCTGGATAAGATCAACGAGTTCCACTGCGAGTGCCCCACTG
Seq C2 exon
GGTTCAACGGGCACCTGTGCCAGTTTGACATCGATGAGTGTGCCAGCACCCCCTGCAAGAATGGGGCCAAGTGCGTGGATGGCCCCAACACCTACAGCTGCGAGTGCACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002375-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(79.5=49.2),PF0764510=EGF_CA=PU(72.5=46.0)
A:
PF0764510=EGF_CA=PD(25.0=25.6),PF0000822=EGF=PU(80.6=64.1)
C2:
PF0000822=EGF=PD(16.1=12.8),PF0000822=EGF=PU(80.6=64.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAATGCCAGTGTCTGCAG
R:
CACTCGCAGCTGTAGGTGTTG
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]