BtaEX6047234 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022799 | NOTCH1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSM3]
Coordinates
chr11:104004561-104005652:-
Coord C1 exon
chr11:104005419-104005652
Coord A exon
chr11:104005216-104005326
Coord C2 exon
chr11:104004561-104004753
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTCCGGTCTCCCACCCCCAGGAC
3' ss Score
10.82
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTACACGGGGCCCCACTGCGAGGTGGACATCGACGAGTGTGACCCCGACCCCTGCCACTACGGGTCCTGCAAGGACGGCGTGGCCACCTTCACCTGCCTGTGCCAGCCGGGCTACACGGGCCACCACTGTGAGAGCAACATTAACGAGTGCCACAGCCAGCCCTGCCGCCACGGGGGCACCTGCCAGGACCGCGACAACGCCTATCTCTGCTTCTGCCTCAAGGGGACCACAG
Seq A exon
GACCCAACTGCGAGATCAACCTGGATGACTGCGCAAGCAACCCTTGCGACTCCGGCACGTGTCTGGACAAGATTGACGGCTACGAGTGTGCCTGTGAGCCAGGCTACACAG
Seq C2 exon
GGAGTATGTGTAACATCAACATTGACGAGTGTGCGGACAGCCCTTGCCACAACGGGGGCACCTGCGAGGATGGCATCAACGGCTTCACCTGTCGCTGCCCCGAGGGCTACCACGACCCCACCTGCCTGTCTGAGGTCAACGAGTGCAGCAGCAACCCCTGCATCCATGGGGCCTGCCGCGACAGCCTCAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022799-'14-11,'14-10,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=6.3),PF0000822=EGF=WD(100=38.0),PF0000822=EGF=PU(90.3=35.4)
A:
PF0000822=EGF=PD(6.5=5.3),PF0000822=EGF=PU(93.1=71.1)
C2:
PF0000822=EGF=PD(3.4=1.5),PF0000822=EGF=WD(100=58.5),PF0000822=EGF=PU(53.3=24.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAACGAGTGCCACAGCCAG
R:
CTGCACTCGTTGACCTCAGAC
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]