GgaEX1040086 @ galGal4
Exon Skipping
Gene
ENSGALG00000002375 | NOTCH1
Description
notch 1 [Source:HGNC Symbol;Acc:HGNC:7881]
Coordinates
chr17:7825399-7833066:+
Coord C1 exon
chr17:7825399-7825632
Coord A exon
chr17:7828882-7828992
Coord C2 exon
chr17:7832882-7833066
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCCCCGCTTTCCTCCTCAAGGGC
3' ss Score
9.09
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCAGTACTGCACCGAGGATGTGGATGAGTGCCAGCTGATGCCCAACGCCTGCCAGAACGGGGGCACCTGCCACAACAACCACGGCGGCTACAACTGCGTCTGCGTCAATGGCTGGACGGGTGAGGACTGCAGTGAGAACATCGATGACTGCGCCATGGCTGCCTGCTTCCAGGGGGCCACCTGCCATGACCGGGTGGCCTCCTTCTACTGCGAGTGTCCCCATGGGCGCACAG
Seq A exon
GGCCCAACTGCGAGATCAACCTGGACGACTGCGCCAGCAACCCCTGCGACTACGGCAAGTGCATCGACAAGATCAACGGCTATGAGTGCACCTGTGAGCCGGGGTACACAG
Seq C2 exon
GTATCGACGTCGCTCATCTCTGCAGGAACTCAGGGCTCTGTGTGGACAGTGGCAACACTCACTTCTGCCGCTGCCAGGCTGGCTACACCGGCAGCTACTGCGAGGAGCAGGTGGATGAGTGCTCCCCCAACCCCTGCCAGAACGGAGCCACCTGCACCGACTACCTGGGGGGCTATTCCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002375_MULTIEX1-6/15=C1-C2
Average complexity
C3
Mappability confidence:
99%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=2.5),PF0764510=EGF_CA=WD(100=51.9),PF0000822=EGF=PU(92.1=44.3)
A:
PF0000822=EGF=PD(6.5=5.3),PF0000822=EGF=PU(93.1=71.1)
C2:
PF0000822=EGF=WD(100=46.8),PF0000822=EGF=PU(67.7=33.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGCACCGAGGATGTGGAT
R:
GTTCCTGCAGAGATGAGCGAC
Band lengths:
258-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]