RnoEX6016001 @ rn6
Exon Skipping
Gene
ENSRNOG00000019322 | Notch1
Description
notch 1 [Source:RGD Symbol;Acc:3187]
Coordinates
chr3:3924411-3925781:-
Coord C1 exon
chr3:3925548-3925781
Coord A exon
chr3:3925358-3925468
Coord C2 exon
chr3:3924411-3924603
Length
111 bp
Sequences
Splice sites
3' ss Seq
ACATGTCACGCTGCCCCTAGGAC
3' ss Score
9.07
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTTACACGGGGACCCACTGCGAGGTGGACATTGACGAGTGTGACCCTGACCCCTGTCACTATGGTTTGTGCAAGGATGGTGTGGCCACCTTTACCTGCCTCTGCCAGCCAGGCTACACAGGCCATCACTGTGAGACCAACATTAATGAGTGTCACAGCCAGCCGTGCCGCCATGGCGGCACCTGCCAGGACCGTGACAACTACTACCTCTGCTTATGCCTCAAGGGGACCACAG
Seq A exon
GACCCAACTGTGAGATCAATCTGGATGACTGTGCGAGCAACCCCTGTGACTCTGGCACGTGTCTGGACAAGATCGATGGCTACGAGTGTGCGTGCGAGCCAGGCTACACAG
Seq C2 exon
GGAGCATGTGTAATGTCAACATTGACGAATGTGCGGGCAGCCCCTGCCACAACGGGGGCACCTGTGAGGATGGCATCGCCGGCTTCACTTGCCGCTGCCCCGAGGGCTACCACGACCCTACGTGCCTGTCTGAGGTCAACGAGTGCAACAGTAACCCCTGCATCCATGGAGCTTGCCGGGATGGCCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019322-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(16.1=6.3),PF0000822=EGF=WD(100=38.0),PF0000822=EGF=PU(90.3=35.4)
A:
PF0000822=EGF=PD(6.5=5.3),PF0000822=EGF=PU(93.1=71.1)
C2:
PF0000822=EGF=PD(3.4=1.5),PF0000822=EGF=WD(100=58.5),PF0000822=EGF=PU(53.3=24.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGAGTGTCACAGCCAGCC
R:
GATGCAGGGGTTACTGTTGCA
Band lengths:
256-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]