BtaEX6047256 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025161 | AGPAT2
Description
Bos taurus 1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) (AGPAT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001080264]
Coordinates
chr11:104135610-104137878:-
Coord C1 exon
chr11:104137703-104137878
Coord A exon
chr11:104137361-104137456
Coord C2 exon
chr11:104135610-104135682
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTGTCTCCTCAACAGCTC
3' ss Score
9.32
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCCTCATGGAGGTCCTCCCCGACCGCTGCGTGCAGATCGCCAAGCGAGAGCTGCTCTTCCTGGGGCCCGTGGGCCTGATCATGTACCTGGGGGGCGTCCTCTTCATCAACCGGCAGCACTCCCAGACGGCCATGAGCGTGATGACCGATGTGGGCGAGCGCATGGTCAGGGAGAAG
Seq A exon
CTCAAAGTGTGGATCTACCCGGAGGGCACGCGGAATGACAACGGGGACCTCCTGCCTTTCAAGAAAGGCGCCTTCTACCTGGCGATCCAGGCCCAG
Seq C2 exon
GTACCCATCATCCCTGTGATTTACTCCAGCTTCTCCTCCTTCTACAGCTGTAAGACGAAGCTCTTCACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025161-'9-6,'9-4,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=FE(45.0=100)
A:
PF0155316=Acyltransferase=FE(24.0=100)
C2:
PF0155316=Acyltransferase=PD(6.2=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCCTGATCATGTACCTG
R:
AGAGCTTCGTCTTACAGCTGT
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]