DreEX0012086 @ danRer10
Exon Skipping
Gene
ENSDARG00000101139 | agpat2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) [Source:ZFIN;Acc:ZDB-GENE-061103-541]
Coordinates
chr21:7647426-7656597:+
Coord C1 exon
chr21:7647426-7647601
Coord A exon
chr21:7649724-7649819
Coord C2 exon
chr21:7656525-7656597
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGCACTGGTTTTTAGATC
3' ss Score
8.57
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTATGGTGGAGATCTTACCAGATCGCTGCACAATGATCGCTAAGAAAGAGCTGATATGGGCTGGGACAGTGGGCATGATTTGCTGGCTGGGAGGAATCGTCTTCATCAACCGCAAAAAGACAAGCGACGCCAAGAACGTCATGAGTGACGCTGCCAAAACCATGTTGACCGACAAG
Seq A exon
ATCCGATTGTGGGTGTTTCCGGAAGGCACGCGGAATCAGAACGGTGGACTTTTGCCTTTTAAAAAGGGAGCGTTTCATTTGGCTATTCAAGCACAG
Seq C2 exon
GTTCCCATTATACCCATTGTGTTCTCTTCCTACAGCAAATTCTACCTAAGAAAAGAGAAAGAGTTCAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101139-'7-6,'7-4,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=FE(45.0=100)
A:
PF0155316=Acyltransferase=FE(24.0=100)
C2:
PF0155316=Acyltransferase=PD(6.2=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCTGATATGGGCTGGGA
R:
TGCTGTAGGAAGAGAACACAATGG
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]