GgaEX6027230 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NKP0]
Coordinates
chr27:1677266-1677938:+
Coord C1 exon
chr27:1677266-1677441
Coord A exon
chr27:1677555-1677650
Coord C2 exon
chr27:1677866-1677938
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTCACCCTGTCCTGTGCAGCTC
3' ss Score
9.96
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCATGGTGGAGGTCATCCCCAAGCGCTGCGTGCCCATCGCCAAGAAGGAGCTCCTGTACATGGGCACTGTGGGCTGGGCCTGCTGGCTCAGTGGCATGATCTTCATCGACCGCCAAAGGACAGGAGATGCCATCGATGTCATCTCCCAGACGGCCAAGACTATACAGCGTGAAAAC
Seq A exon
CTCCAAGTGTGGATTTTCCCAGAAGGCACCAGGAACCAGAGCAGATCCATGCTGCCCTTCAAGCGCGGGGCGTTCCACCTGGCTGTGCAGGCTCAG
Seq C2 exon
GTTCCCATTTTCCCCATTGTGATTTCTCCATACTGGGACTTCTTCAGCTCCAAGGAGAAGAAATTCACCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000287-'3-5,'3-4,4-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=FE(45.0=100)
A:
PF0155316=Acyltransferase=FE(24.0=100)
C2:
PF0155316=Acyltransferase=PD(6.2=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGTACATGGGCACTGTG
R:
TGGAGCTGAAGAAGTCCCAGT
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]