HsaEX6046463 @ hg19
Exon Skipping
Gene
ENSG00000204310 | AGPAT1
Description
1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) [Source:HGNC Symbol;Acc:324]
Coordinates
chr6:32137743-32138377:-
Coord C1 exon
chr6:32138202-32138377
Coord A exon
chr6:32137942-32138037
Coord C2 exon
chr6:32137743-32137815
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGACCCTCTTTCTCCCCCAGGTG
3' ss Score
13.61
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGATGATGGAGGTACTGCCAGGCCGCTGTGTGCCCATTGCCAAGCGCGAGCTACTGTGGGCTGGCTCTGCCGGGCTGGCCTGCTGGCTGGCAGGAGTCATCTTCATCGACCGGAAGCGCACGGGGGATGCCATCAGTGTCATGTCTGAGGTCGCCCAGACCCTGCTCACCCAGGAC
Seq A exon
GTGAGGGTCTGGGTGTTTCCTGAGGGAACGAGAAACCACAATGGCTCCATGCTGCCCTTCAAACGTGGCGCCTTCCATCTTGCAGTGCAGGCCCAG
Seq C2 exon
GTTCCCATTGTCCCCATAGTCATGTCCTCCTACCAAGACTTCTACTGCAAGAAGGAGCGTCGCTTCACCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204310-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=PU(57.6=98.3)
A:
PF0155316=Acyltransferase=FE(24.0=100)
C2:
PF0155316=Acyltransferase=PD(6.2=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGCCCATTGCCAAGC
R:
AGGAGGACATGACTATGGGGAC
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)