MmuEX0004257 @ mm10
Exon Skipping
Gene
ENSMUSG00000034254 | Agpat1
Description
1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) [Source:MGI Symbol;Acc:MGI:1932075]
Coordinates
chr17:34610445-34611866:+
Coord C1 exon
chr17:34610445-34610644
Coord A exon
chr17:34611605-34611700
Coord C2 exon
chr17:34611791-34611866
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTTTATGGCCTCCCATCAGGTG
3' ss Score
8.74
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
GTGACCAGAATGGAGCTGTGGCCCGGGGCCTGGACGGCGCTGCTGCTGCTGCTGCTCCTGCTGCTGTCCACCCTGTGGTTCTGCAGCTCCAGTGCCAAGTATTTCTTTAAGATGGCCTTCTACAACGGCTGGATCCTCTTCCTGGCGATCCTCGCAATCCCCGTGTGTGCTGTGCGAGGGCGCAATGTCGAGAACATGAA
Seq A exon
GTGAGAGTCTGGGTTTTTCCTGAAGGAACAAGAAACCACAATGGCTCCATGCTGCCCTTCAAACGAGGCGCCTTCCACCTTGCAGTACAGGCCCAG
Seq C2 exon
GTCCCCATCATCCCCATCGTCATGTCCTCCTATCAAGACTTCTACTCCAAAAAGGAAAGACGCTTCACCTCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034254_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0155316=Acyltransferase=FE(24.0=100)
C2:
PF0155316=Acyltransferase=PD(6.2=30.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGGCCTTCTACAACGGC
R:
AGGCGAGGTGAAGCGTCTTTC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types