RnoEX0007935 @ rn6
Exon Skipping
Gene
ENSRNOG00000000437 | Agpat1
Description
1-acylglycerol-3-phosphate O-acyltransferase 1 [Source:RGD Symbol;Acc:1303287]
Coordinates
chr20:4376261-4376789:+
Coord C1 exon
chr20:4376261-4376436
Coord A exon
chr20:4376541-4376636
Coord C2 exon
chr20:4376717-4376789
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTGCTCTGGCCTCCCTCAGGTG
3' ss Score
10.21
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GAATGATGGAGGTACTGCCAGATCGCTGTGTGCCCATTGCCAAGCGTGAACTATTATGGGCTGGCTCTGCCGGGCTGGCCTGCTGGCTGGCAGGAGTCATCTTCATTGACCGGAAACGCACAGGAGACGCTATCAGTGTCATGTCCGAGGTGGCCCAGACCCTGCTCACCCAGGAT
Seq A exon
GTGAGAGTCTGGGTTTTTCCTGAAGGAACAAGAAACCACAATGGCTCCATGCTGCCCTTCAAACGAGGCGCCTTCCACCTTGCAGTACAGGCCCAG
Seq C2 exon
GTCCCCATCGTCCCCATTGTCATGTCCTCCTATCAAGACTTCTACTGCAAAAAGGAACGCCGCTTCACCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000437-'18-15,'18-13,20-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=PD(25.0=83.3)
A:
PF0155316=Acyltransferase=FE(24.0=100)
C2:
PF0155316=Acyltransferase=PD(6.2=32.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATTGCCAAGCGTGAACTA
R:
CATGACAATGGGGACGATGGG
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]