BtaEX6098215 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004442 | AGPAT1
Description
Bos taurus 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) (AGPAT1), mRNA. [Source:RefSeq mRNA;Acc:NM_177518]
Coordinates
chr23:27022202-27022824:+
Coord C1 exon
chr23:27022202-27022377
Coord A exon
chr23:27022527-27022622
Coord C2 exon
chr23:27022752-27022824
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGACCCCCTCTCTCCCCCAGGTA
3' ss Score
12.34
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
GGATGATGGAGGTGCTGCCAGGCCGCTGTGTGCCCATTGCCAAGCGGGAGCTGCTGTGGGCCGGCTCTGCTGGGCTGGCCTGCTGGCTGGCGGGAGTCATCTTCATTGACCGGAAGCGCACTGGGGATGCCATCAGTGTCATGTCTGAGGTCGCCCAGACCCTGCTTACACAGGAC
Seq A exon
GTACGGGTCTGGGTTTTTCCTGAGGGCACGAGAAACCACAACGGCTCCATGCTGCCCTTCAAACGTGGCGCCTTCCACCTCGCAGTGCAGGCCCAG
Seq C2 exon
GTTCCCATTGTGCCCATCGTCATGTCCTCCTATCAAGACTTCTACTGCAAGAAGGAGCGCCGCTTCACTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004442-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=FE(45.0=100)
A:
PF0155316=Acyltransferase=FE(24.0=100)
C2:
PF0155316=Acyltransferase=PD(6.2=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGCCCATTGCCAAGC
R:
GGACATGACGATGGGCACAAT
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]