HsaEX6046463 @ hg38
Exon Skipping
Gene
ENSG00000204310 | AGPAT1
Description
1-acylglycerol-3-phosphate O-acyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:324]
Coordinates
chr6:32169966-32170600:-
Coord C1 exon
chr6:32170425-32170600
Coord A exon
chr6:32170165-32170260
Coord C2 exon
chr6:32169966-32170038
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGACCCTCTTTCTCCCCCAGGTG
3' ss Score
13.61
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGATGATGGAGGTACTGCCAGGCCGCTGTGTGCCCATTGCCAAGCGCGAGCTACTGTGGGCTGGCTCTGCCGGGCTGGCCTGCTGGCTGGCAGGAGTCATCTTCATCGACCGGAAGCGCACGGGGGATGCCATCAGTGTCATGTCTGAGGTCGCCCAGACCCTGCTCACCCAGGAC
Seq A exon
GTGAGGGTCTGGGTGTTTCCTGAGGGAACGAGAAACCACAATGGCTCCATGCTGCCCTTCAAACGTGGCGCCTTCCATCTTGCAGTGCAGGCCCAG
Seq C2 exon
GTTCCCATTGTCCCCATAGTCATGTCCTCCTACCAAGACTTCTACTGCAAGAAGGAGCGTCGCTTCACCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204310-'14-17,'14-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=FE(45.0=100)
A:
PF0155316=Acyltransferase=FE(24.0=100)
C2:
PF0155316=Acyltransferase=PD(6.2=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGCCCATTGCCAAGC
R:
AGGAGGACATGACTATGGGGAC
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains