RnoEX0007938 @ rn6
Exon Skipping
Gene
ENSRNOG00000019466 | Agpat2
Description
1-acylglycerol-3-phosphate O-acyltransferase 2 [Source:RGD Symbol;Acc:1309229]
Coordinates
chr3:4045862-4047659:-
Coord C1 exon
chr3:4047484-4047659
Coord A exon
chr3:4047279-4047374
Coord C2 exon
chr3:4045862-4045934
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTTTTTACTGGCAGCTC
3' ss Score
9.51
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTCTCATGGAAATACTCCCTAAGCGCTGTGTGCAGATTGCCAAGCGTGAGCTAATGTTCACAGGACCCGTGGGCCTCATCATGTACCTAGGGGGTGTCTATTTCATCAACCGCCAGCAAGCCAAAACTGCCATGTCCTTGATGGCCGACCTAGGCGACCTCATGGTCAAGGAGAAC
Seq A exon
CTCAAAGTGTGGATTTACCCAGAGGGTACACGCAACGACAATGGAGACCTGTTGCCCTTTAAAAAAGGTGCCTTCTACTTGGCCATCCAGGCCCAG
Seq C2 exon
GTACCCATCATCCCTGTGGTGTACTCCTCCTTTTCCTCCTTCTACAATGTTAAGACGAAGCTCTTCACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019466-'16-14,'16-8,18-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=FE(45.0=100)
A:
PF0155316=Acyltransferase=FE(24.0=100)
C2:
PF0155316=Acyltransferase=PD(6.2=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAAGCGCTGTGTGCAGATT
R:
ACACCACAGGGATGATGGGTA
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]